Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSFNYTTPDYGHYDDKDTLDLNTPVDKTSNTLRVPDILALVIFAVVFLV--GVLGNALVVWVTA-FEAKRTINAIWFLNLAVADFLSCLALPILFTSIVQHHHWPFGGAACSILPSLILLNMYASILLLATISADRFLLVFKPIWCQNFRGAGLAWIACAVAWGLALLLTIPSFLYRVVREEYFP--PKVLCGVDY--SHDKRRERAVAIVRLVLGFLWPLLTLTICYTFILLRTWSRRATRSTK-----TLKVVVAVVASFFIFWLPYQVTGIMMSFLEPSSPTFLLLKKLDSLCVSFAYINCCINPIIYVVAGQGFQGRLRKSLPSLLRNVLTEESVVRESKSFTRSTVDTMAQKTQAV |
| 1F88 Chain:A ((1-348)) | MNGTE--GPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVMALACAAPPLVGW---SRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT-HQGSDFGPIFMTIPAFFAKTSAV---YNPVIYIMM------------NKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -256633 for 2668 contacts (-96.2/contact) +
2D Compatibility (PS) -33302 + (NN) -12666 + (LL) 1444
1D Compatibility (HY) -26800 + (ID) 3650
Total energy: -331607.0 ( -124.29 by residue)
QMean score : 0.323
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