Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------MENNTEVSEFILLGLTNAPELQVPLFIMFTLIYLITLTGNLGMIILILLDSHLHTP----MYFFLSNLSLAGIGYSSAVTPKVL-TGLLIEDKAISYSACAAQ----MFFCAVFATVENYLLSSMAYDRYAAVCNPLHYTTTMTTRVCACLAIGCYVIGFLNASIQIGDTFRLSFCMSNVIHHFFCDKPAVITLTC-SEKHISELILVLISSFNVFFALLVTLISYLFILITILKRHTGKGYQKPLSTCGSHLIAIFLFYITV-------IIMYIRPSSSHSMDTDKIASVFYTMIIPMLSPIVYTLRNKDVKNAFMKVVEKAKYSLDSVF |
| 5AHR Chain:A ((1-343)) | SMTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTFPVYCSEITGNLLKNKLHVQEQYIHPLPLDTECIVNG----VKVVLLDAN-HCPGAVMILFYLPNGT------------VILHTGDFRADPSMERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAI--NTAFEAVTLNPH--ALVVCGTYSIGKEKVFLAIADVLGSKVGMS---------QEKYKTLQCLNIPEINSLIT------TDMCSSLVHLLPMMQINFKGLQSHLKK--------CGGKYNQILAFRPTVIPQTKGNISIYGIPYSEHS--SYLEMKRFVQWLKP--QKIIPTVNVGTWKSRSTMEKYFREWKLEAGY |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AHR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -269665 for 1939 contacts (-139.1/contact) +
2D Compatibility (PS) -27822 + (NN) 20 + (LL) 3244
1D Compatibility (HY) -12400 + (ID) 3400
Total energy: -310023.0 ( -159.89 by residue)
QMean score : 0.205
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