Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNASNDSQS--EDCETRQWLPPGESP--AISSVMFSAGVLGNLIALALLARRWRGDVGCSAGRRSSL-SLFHVLVTELVFTDLLGTCLISPVVLASYARNQTLVALAPESRACTYFAFAMTFFSLATMLMLFAMALERYLSIGHPYFYQRRVSRSGGLAVLPVIYAVSLLFCSLPLLDYGQYVQYCPGTWCFI-------RHGRTAYLQLYATLLLLLIVSVLACNFSVILNLIRMHRRSRRSRCGPSLGSGRGGPGARRRGERVSMAEETDHLILLAIMTITFAVCSLPFTIFAYMNETSSRKEKWDLQALRFLSINSIIDPWVFAILRPPVLRLM-RSVLCCRISLRTQDATQTSCSTQSDASKQADL |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG----YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKP-MSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQ-----------------------KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH-QGSDFGPIFMTIPAFFAKTSA----VYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -272302 for 2649 contacts (-102.8/contact) +
2D Compatibility (PS) -33648 + (NN) -14840 + (LL) 1040
1D Compatibility (HY) -20000 + (ID) 2250
Total energy: -342000.0 ( -129.11 by residue)
QMean score : 0.357
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