Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCNPAQLSPCLPAISSSSPPSTTCCSKLKEQKPCLCGYLKDPALKQFVSSPGARKVASACGVPYPSC
M042 Chain:A ((1-101))
VTCNPAQLSPCLPAISSSSPPSTTCCSKLKEQKPCLCGYLKDPALKQFVSSPGARKVASACGVPYPSC
General information:
TITO was launched using:
RESULT:
Template:
M042.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29202 for 449 contacts (-65.0/contact) +
2D Compatibility (PS) -7213 + (NN) -7079 + (LL) 0
1D Compatibility (HY) -8800 + (ID) 3400
Total energy: -55694.0 ( -124.04 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_M042.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M042-query.scw
PDB file :
Tito_Scwrl_M042.pdb
: