Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MVEVFLNNATKKIEGEYHQ-SKETNAPVVLILHHHPQYGGSMDSKMIHSIYTSFIDNNFSALKINFRGVGKSTGTFDKGIGELTDAAIAIDWLQEHNPSNVPIWIVGFSFGAWVAMQLTMRRPEIVGFIALSLPATKYDFSFLSPCPVPGLIIQSSNDTISEESDVTELANRLINSVKSDHMEYHIIGDTNHFLRDKEEEVTQIIDNYVKLRLNSAAISSQMVKKEIRIKEYA
3TRD Chain:A ((1-208))
SYVMTNEDFLIQGPVGQLEVMITRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWS-QDDIWLAGFSFGAYISAKVAYDQK-VAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQI-----SSPVEFVVMSGASHFFHGRLIELRELLVRNLA-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3TRD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144719 for 1798 contacts (-80.5/contact) +
2D Compatibility (PS) -22497 + (NN) -12020 + (LL) 2872
1D Compatibility (HY) -16000 + (ID) 2450
Total energy: -194814.0 ( -108.35 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3TRD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRD-query.scw
PDB file :
Tito_Scwrl_3TRD.pdb
: