Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSDLWNFFTEVPSEGYIVESSYCTDSGCSNYIGNIDLSNIREFNLVSPDRKITKKFEANIIDFFEPRVHLSMDDSGKKINLDIAPE----NCSATKDGFLCIDKNEQDYKLKILIKKS--
2GDT Chain:A ((1-116))
---GHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKN-GTCGLVELEKGVLPQLEQPYV-FIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRNVLLRKNG
General information:
TITO was launched using:
RESULT:
Template:
2GDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9240 for 799 contacts (-11.6/contact) +
2D Compatibility (PS) -11365 + (NN) 224 + (LL) 280
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -25651.0 ( -32.10 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_2GDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GDT-query.scw
PDB file :
Tito_Scwrl_2GDT.pdb
: