Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MATKSNIIMKVAKRHPLLDRIVIAAIVNRFFEILSSTLEHHNRVEIRGFGSFSIRSYNLKETSHLMLQKFAKNQYFK-------TYFRSSKKLSDLINE----
1KAF Chain:A ((104-211))
MEITSDMEEDKDLMLKLLDKNGF-VLKKVEIYRSNYLAILEKRTNGIRNFEINNNGNMRIFGYKMMEHHIQKFTDIGMSCKIAKNGNVYLDIKRSAENIEAVITVASEL
General information:
TITO was launched using:
RESULT:
Template:
1KAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28503 for 611 contacts (-46.6/contact) +
2D Compatibility (PS) -9509 + (NN) 99 + (LL) 176
1D Compatibility (HY) -6400 + (ID) 650
Total energy: -44787.0 ( -73.30 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_1KAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAF-query.scw
PDB file :
Tito_Scwrl_1KAF.pdb
: