Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKGIITNIGTIINTTIRSNSDQIFHIKAQNLSSIHEGDSIACSGVCLTVVDIINDIFTVQISQETMKVSNLGAWKVGKKINLEQAMRLSDKIDGHLVHGHVDETAKILTINQNLG-SHEIKLSCP-QELIKFVAKKGSVTLDGVSLTVNSVIGREFTVNIIPYTWQNTTFQYNKVNDYLNLEVDMIARYLDQLIQYKYN--
1KZL Chain:A ((94-202))
--------------------------------------------------------------------------------------------MGGHFVQGHVDTVAEIVEKKQD-GEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEAHIADW
General information:
TITO was launched using:
RESULT:
Template:
1KZL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57958 for 710 contacts (-81.6/contact) +
2D Compatibility (PS) -11477 + (NN) -1784 + (LL) 6920
1D Compatibility (HY) -9600 + (ID) 1700
Total energy: -75599.0 ( -106.48 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1KZL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KZL-query.scw
PDB file :
Tito_Scwrl_1KZL.pdb
: