Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIIKTIEEKIRGSIDVIDVDIIDESVKHADHYFSSSSMLPSHIKLVLISDNFAGMDSLKRHRLIYELLKSEIELIHAISLHLYTQSEYNLKNK--------
1YLQ Chain:A ((1-92))
AGHMKEIKEITKKDVQDAEIYLYGSVVE------GDYSIGLSDIDVAIVSDVFE---DRNRKLEFFGKITKKFFD-SPFEFHILTKKEWKMSKRFIRKYRRL
General information:
TITO was launched using:
RESULT:
Template:
1YLQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55158 for 552 contacts (-99.9/contact) +
2D Compatibility (PS) -9132 + (NN) -3854 + (LL) 544
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -73100.0 ( -132.43 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1YLQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YLQ-query.scw
PDB file :
Tito_Scwrl_1YLQ.pdb
: