Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMKITISKVLPDFETLVVGLFEDGELVSNGKVLQ--DKQIINSIKKFSHFNGGFGE---FFSVTLSDGKNVIIVGLGKRDEWNENKELSVGGKI------------YCELGRLKIK------QATVSIEGSAENIAYGAFLRSFKFDKYKTKKDEEITEVEEIMV-LAKDEQLNDAEKSFEHLRQEGEGIFLARTFITEPPNVL---YPESYADCIKSELTKFGLEIEVLDKKQMEKKKMGALLGVAQGSSKEPKLVVIRWNG-ASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSAAVVGVMRTLAGRKARINAVGVVALAENAIDGNAQRPSDVVTSMSGQTIEVLNTDAEGRLVLADALWYTQDRFAPEFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLVEAGNEANEKLWRFPMNETYDKIIDSPIADVQNIAPTGSGGDSIMAAQFLQRFVNDTCWAHLDIAGTAWHEKGTDISPKGAVGFGVRLLNKLVEKYYETSD |
1GYT Chain:B ((17-493)) | --------------CIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETL--------YSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSK-NVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHH-ITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIG--GRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSG----KAKGATGRPVALLAQFLLNRAGFNG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -229985 for 3964 contacts (-58.0/contact) +
2D Compatibility (PS) -48527 + (NN) -21116 + (LL) 2228
1D Compatibility (HY) -37600 + (ID) 9100
Total energy: -344100.0 ( -86.81 by residue)
QMean score : 0.494
|
|
|