Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDF---VQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGIKWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLEQFDHIKRVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNI--SIMDVH--KEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDEIILLNPMGMAIEDISSAYFIYQQAQQQNIGTTLNLY |
4BVA Chain:A ((24-334)) | -KRAPAFLSAEEVQDHL-RSSSLLIPPLEAALANFSKGPDGGVMQPVRTVVPVAKHRGFLG--VMPAYSAAEDALTTKLVTFY------------ESHQASVLLFDPSNGSLLAVMDGNVITAKRTAAVSAIATKLLKPPGSDVLCILGAGVQAYSHYEIFTEQFS-FKEVRMWNRTRENAEKFASTVQG-----DVRVCSSVQEAVTGADVIITVTMATEPILFGEWVKPGAHINAVGASRPDWRELDDELMRQAVLYVDSREAALKES-------GDVLLSGADIFAELGEVISGAKPAHCEKT--TVFKSLGMAVEDLVAAKLVYDSWSSG--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156778 for 2592 contacts (-60.5/contact) +
2D Compatibility (PS) -31913 + (NN) -14281 + (LL) 1824
1D Compatibility (HY) -18000 + (ID) 3600
Total energy: -222748.0 ( -85.94 by residue)
QMean score : 0.454
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