Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKP-MNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPGH-FAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
3OCC Chain:A ((3-233))
---TPHINAEMGD--FADVVLMPGDPLRAKFIAETFLQDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYAKELITDFGVKKIIRVGSCGAVRTDVKLRDVVIGMGACTDSK-VNRMRFKDHDYAAIADFEMTRNAVDAAKAKGVNVRVGNLFSADLFYTPDPQMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTGEQTTAAERQTTFNDMIEIALESV
General information:
TITO was launched using:
RESULT:
Template:
3OCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165616 for 2069 contacts (-80.0/contact) +
2D Compatibility (PS) -24592 + (NN) -7245 + (LL) 632
1D Compatibility (HY) -25600 + (ID) 6200
Total energy: -228621.0 ( -110.50 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3OCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OCC-query.scw
PDB file :
Tito_Scwrl_3OCC.pdb
: