Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLTEQEKDIIKQTVPLLKEKGTEITSIFYPKMFKAHPELLNMFNQTNQKRGMQSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCALQVYAEHYPIVGENLLKAIQDVTGLEEHDPVIQAWAKAYGVIADVFIQIEKEIYD-----QMMWIGFKPFKITNIKQESEDIKSFTVETEE-YDFSEFTPGQYITVDVSSDKLPYRAKRHYSIVSGE-KNHLTFGVKRDVTTEHEGEVSTILHDEIKEGDMINLAAPVGGFVLENT-TEPQLFLGSGIGVTPLVAMYEAASAKG--LDTQMVQVAENEQHLPFKDNFNSIAS-HYDNAKLYTHLKDK------------QGYIGTEELQAFLA-NKPEIYICGGTKFLQSMIEALKSLNYDMDRVHYETFIPRLSVAV |
| 1GVH Chain:A ((1-396)) | MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHLLATLDEMFSP--GQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRIAVKRE----EGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPR-FTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGPHKVL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201627 for 2967 contacts (-68.0/contact) +
2D Compatibility (PS) -39434 + (NN) -2982 + (LL) 864
1D Compatibility (HY) -24000 + (ID) 6200
Total energy: -273379.0 ( -92.14 by residue)
QMean score : 0.517
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