Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRK-ERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
1G4C Chain:B ((3-142))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPATLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
1G4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108326 for 1021 contacts (-106.1/contact) +
2D Compatibility (PS) -14424 + (NN) -3805 + (LL) 1800
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -139155.0 ( -136.29 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1G4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4C-query.scw
PDB file :
Tito_Scwrl_1G4C.pdb
: