Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVKNLFLGFVAVILTVCLIGLLILATNEDALAKVHKTINTLNAINVSTEDTYKKKMDILNIHTAKASEVNENVEKQNHFKHRVNANKSNSFNEQECQVIADRYADKHINDNYGLERISKTNHGYNYVYSNDNSTSKQHVSISNQGIITK
2FDU Chain:C ((271-327))
MTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKM---------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2FDU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11893 for 248 contacts (-48.0/contact) +
2D Compatibility (PS) -5755 + (NN) -3003 + (LL) 4796
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -18355.0 ( -74.01 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_2FDU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FDU-query.scw
PDB file :
Tito_Scwrl_2FDU.pdb
: