Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLLETFEMSIDHQEDGLVVISMPVTDKVKQPFGYLHGGASIALGETACSLGSANLIDTTKFIPLGLEMNANHIHSAKDGRVTATAEIIHRGKSTHVWDIKIKNDKEQLITVMRGTVAIKPLK
4K49 Chain:D ((24-135))
-------LDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAI----
General information:
TITO was launched using:
RESULT:
Template:
4K49.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73194 for 850 contacts (-86.1/contact) +
2D Compatibility (PS) -11610 + (NN) 1730 + (LL) 836
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -90788.0 ( -106.81 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_4K49.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K49-query.scw
PDB file :
Tito_Scwrl_4K49.pdb
: