Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRQARPEDRFDIAKLVYMVWDDMELELVKH-----LPKDMVLDAIEKSCVDATYRTFYQHILVYEV-ENKVAGCIISYSGENELKYEKAWELLDLPEEIKQYGTPLPVKEAKDDEYYIETIATFAAYRGRGIATKLLTSLLES---NTHVKWSLNCDINNEAALKLYKKVGFISDGQIEL--YKHMYHHLIVK
2CY2 Chain:A ((2-164))
RIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTP---TWPGRLFVAESESGEVVGFAAFGPDRAS--------------------------GFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVA--
General information:
TITO was launched using:
RESULT:
Template:
2CY2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89189 for 1087 contacts (-82.1/contact) +
2D Compatibility (PS) -16187 + (NN) -5832 + (LL) 2436
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -112272.0 ( -103.29 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_2CY2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CY2-query.scw
PDB file :
Tito_Scwrl_2CY2.pdb
: