Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
2NSJ Chain:A ((9-159))
-RVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEV--------
General information:
TITO was launched using:
RESULT:
Template:
2NSJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115512 for 1266 contacts (-91.2/contact) +
2D Compatibility (PS) -16049 + (NN) -4051 + (LL) 884
1D Compatibility (HY) -14800 + (ID) 3800
Total energy: -153328.0 ( -121.11 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_2NSJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NSJ-query.scw
PDB file :
Tito_Scwrl_2NSJ.pdb
: