Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKILLAVTGGIAAYKAIDLTSKLTQSGYEVRVMLTNHAQKFVTPLAFQAISRNAVYTDTFIEENPSEIQHIALGDWADAIIVAPATANTIAKLSVGIADDLVTSTLLATETPKFIAPAMNVHMYENKRTQQNINILKEDGYHFIEPGSGFLACGYVAKGRMEEPLQIVSVIDAHFQNSNRLANSSFQDKRALVTAGPTIEVIDPVRFVSNRSSGKMGYAIAEALRNRGAIVTLVAGPTTLED--PKDIEVIHVQSAEEMFEQVTSRFDEQDIVVKAAAVSDYTPVDV--------------------LEHKMKKQDGDLSVSFKRTKDILKYLGEHKTSQYLIGFAAETE----DIENYAQQKLRKKNADVIISNNVGDMSIGFSSDDNELTMHFKNNEKVNIKKGKKVVLAAQILDELETRWQ |
| 2GK4 Chain:A ((3-230)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLVKEWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLT----QISADQHRAIFVEKNQL---QTVQTKEEIAELLLEKIQAY-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -51343 for 1566 contacts (-32.8/contact) +
2D Compatibility (PS) -21819 + (NN) -6844 + (LL) 15056
1D Compatibility (HY) -14000 + (ID) 2750
Total energy: -81700.0 ( -52.17 by residue)
QMean score : 0.447
|
|
|