Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPVFELKNVNYYYDHKKVLENINIKINKGEFLAIVGPNGAGKSTLLKLILGLLPLQSGEIFVEGIDFKNKKTSIKLSYVSQKANAFNSGFPASVKEVVL----------SGLTKTKRLF-QTFNSKDNE---KVIKVLERLNISDLIHKNIAELSGGQQQRVMIARALISEPAVLVLDEPTNGIDAKHVSEFYNTLDQLKQEGITIILVTHDIGVVADTATEVACLNKHLHFHGTTDEFKSLDEVEISKIYGHPVRFVDHQHNRECCN
1G9X Chain:A ((7-216))
---ILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY--GIVRTFQT--PQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1G9X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110442 for 1451 contacts (-76.1/contact) +
2D Compatibility (PS) -20890 + (NN) -5033 + (LL) 3456
1D Compatibility (HY) -18400 + (ID) 3350
Total energy: -154659.0 ( -106.59 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1G9X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G9X-query.scw
PDB file :
Tito_Scwrl_1G9X.pdb
: