Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELDGFNITIPHKERIIPYLDYVDEQAINAGAVNTVL-IKDGKWIGYNTDGIGYVKGLHSVYPDLENAYILILGAGGASKGIAYELAKFVKPKLTVANRTMARFE------SWNLNINQISLADAEKYLAEFDIVINTTPAGMAGNNESIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHI-YNGLDMFVYQGAESFKIWTNKDADINSMKTAVLQQLKGE |
1NYT Chain:B ((4-269)) | --YAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS-LDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGH--EFDLIINATSSGISGDIPAIPS-SLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEP----VIKQLQEE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -116260 for 2211 contacts (-52.6/contact) +
2D Compatibility (PS) -27464 + (NN) -6534 + (LL) 1368
1D Compatibility (HY) -16000 + (ID) 4550
Total energy: -169440.0 ( -76.64 by residue)
QMean score : 0.492
|
|
|