Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
1YN3 Chain:A ((157-254))
-------------------------------------------GSTVPYTITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININID
General information:
TITO was launched using:
RESULT:
Template:
1YN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34407 for 669 contacts (-51.4/contact) +
2D Compatibility (PS) -11153 + (NN) -4725 + (LL) 2492
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -56743.0 ( -84.82 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_1YN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN3-query.scw
PDB file :
Tito_Scwrl_1YN3.pdb
: