Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPT-QNPIIINECIELGKLYAEPNTPKFLNAILDSLSKKLAQKPLI
3D3B Chain:A ((5-140))
PAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPYLS-RLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK-
General information:
TITO was launched using:
RESULT:
Template:
3D3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78374 for 1028 contacts (-76.2/contact) +
2D Compatibility (PS) -14439 + (NN) -8345 + (LL) 100
1D Compatibility (HY) -9600 + (ID) 1950
Total energy: -112608.0 ( -109.54 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_3D3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3B-query.scw
PDB file :
Tito_Scwrl_3D3B.pdb
: