Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFSQLGGLSGLLDGVKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL--LE---DKEAMQ---IYLMSALNDGYKAVEENRKNLAFNMLGNFAKL
1J8B Chain:A ((7-92))
------------LGGLMKQAQQ-QEKMQKMQEEIA----QLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAG
General information:
TITO was launched using:
RESULT:
Template:
1J8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1230 for 396 contacts (-3.1/contact) +
2D Compatibility (PS) -7769 + (NN) -2564 + (LL) -28
1D Compatibility (HY) 800 + (ID) 700
Total energy: -11491.0 ( -29.02 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1J8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J8B-query.scw
PDB file :
Tito_Scwrl_1J8B.pdb
: