Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSITIPIVIA---FDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLF-YKIHCLVDNLSLENQQKLKETLVPFSAFASVDFLDISTPNL-YTTSVE------PSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHFQTEREREPRQKFSLYEHYLK-----EKDMQIICENHYNVGFLIVNLKLWRADK--LEEHLL---NLTHQKGQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFIPNQQEIIMLHFYFVGKPWILPTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS |
| 4X90 Chain:A ((5-380)) | ---HPPVVLVPGDLGNQLEAKLDKPTVVHYLCSKKTESY---FTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFP-------DGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGED-VRGAPYDWRRAPNEN-----GPYFLALREMIEEMYQLYGGPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYESFPDRDPKICFGDGDGTVNLKSALQCQAWQSRQEHQVLLQELPGSEHI---EMLANATTLAYLKRVLLGP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4X90.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121171 for 2880 contacts (-42.1/contact) +
2D Compatibility (PS) -36201 + (NN) 490 + (LL) 2476
1D Compatibility (HY) -12400 + (ID) 3050
Total energy: -169856.0 ( -58.98 by residue)
QMean score : 0.122
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