Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISNISIHPKTMFKNALNIQDFSFKNHTSTAIIGTNGAGKSTLINTILGIRSDYNFKAQNNNIPYHDN---VIPQRKQLGVVSNLFN-YPPGLNANDLFKFYQFF--------HK---NCTLDLFEKNLLNKTYEHLSDGQKQRLKIDLALSHHPQLVIMDEPETSLEQNALIRLSNLISLRN-TQQLTSIIATHDPIVLD-SCEWVLLLKNGNIAQYKPLNSILKSVAKTFNFKEKPTTKDLLALLKDI
3GFO Chain:A ((21-236))
-------------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEI---
General information:
TITO was launched using:
RESULT:
Template:
3GFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78047 for 1524 contacts (-51.2/contact) +
2D Compatibility (PS) -21432 + (NN) -12621 + (LL) 1292
1D Compatibility (HY) -7600 + (ID) 2600
Total energy: -121008.0 ( -79.40 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_3GFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFO-query.scw
PDB file :
Tito_Scwrl_3GFO.pdb
: