Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDILKTLQKHLGDVETSDFKTNAIEKSQQIAKFSRDMKNINESVGALQVLQIACKKLLNKSMGLEDKDALQASIIKQELREIVENCQFLASPLFDTQLNIAINDEVFSMIVDNPLNLLENVGGFQAYLEEKLNEIKELLGYLSESLSNPKAFMPKQSFSNKSLKDLLSDDLRA |
| 4YMR Chain:A ((11-144)) | --VLPELRRAQSLTCTGL-YREALALWANAWQLQTQLGTPSGPDRPLLTLAGLAVCHQE----LEDPGEARACSEKALQLLGDKRPHPFLAPFLEAHVRLSWR-----------------LGLDKRQSEAQLQALQE---------------AGLTSTPPPSLKELLIKEVLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 19197 for 892 contacts (21.5/contact) +
2D Compatibility (PS) -14634 + (NN) -8756 + (LL) 2204
1D Compatibility (HY) 400 + (ID) 1100
Total energy: -2689.0 ( -3.01 by residue)
QMean score : 0.407
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