Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4CJZ Chain:B ((14-121))
----------TGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSHFG-
General information:
TITO was launched using:
RESULT:
Template:
4CJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51347 for 635 contacts (-80.9/contact) +
2D Compatibility (PS) -11290 + (NN) -5892 + (LL) 248
1D Compatibility (HY) -9600 + (ID) 2300
Total energy: -80181.0 ( -126.27 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_4CJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CJZ-query.scw
PDB file :
Tito_Scwrl_4CJZ.pdb
: