Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAF-D---------------------KTSKMLEK----SPLEDHFMAQISGSKESVVKEAVEKINALDHV-SGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFEKKIPKEIAHALNDAPVDYVVVHGRTR-------------------SDRYQKD---KIDYESIALMKKIL--KKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLR-APWIFWQIRNNTTELPAVVKKDLVLEHFDKMVEFYGDRGVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESIEEFFNQEMLQSEVPLWVELNQKSV |
| 1JUB Chain:A ((7-289)) | ANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKI-QESDFSGITELNLSCPNVPGE-----PQLAYDFEATEKLLKEVFTFFTKP-LGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL-CGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKGYQSIADFHGKLKSL------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JUB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93718 for 1920 contacts (-48.8/contact) +
2D Compatibility (PS) -24288 + (NN) -7748 + (LL) 5604
1D Compatibility (HY) -2000 + (ID) 2150
Total energy: -124300.0 ( -64.74 by residue)
QMean score : 0.437
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