Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQRKESLQNNPNLSKKDIKIVEKILSKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADF--KDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHSF
2HF9 Chain:A ((16-226))
-----------------------KDILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN----LDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK------
General information:
TITO was launched using:
RESULT:
Template:
2HF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120499 for 1803 contacts (-66.8/contact) +
2D Compatibility (PS) -22771 + (NN) -11593 + (LL) 1716
1D Compatibility (HY) -15200 + (ID) 3400
Total energy: -171747.0 ( -95.26 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2HF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HF9-query.scw
PDB file :
Tito_Scwrl_2HF9.pdb
: