Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGGPEHRIKCEVAHNPN---KHQR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL
4DGC Chain:C ((18-144))
--------------------------GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFT---GTGGKS--IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV--KEGMNIVEAMERFGSRNGKTSKKIT
General information:
TITO was launched using:
RESULT:
Template:
4DGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62405 for 834 contacts (-74.8/contact) +
2D Compatibility (PS) -12419 + (NN) -6251 + (LL) 2360
1D Compatibility (HY) -8000 + (ID) 2600
Total energy: -89315.0 ( -107.09 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_4DGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DGC-query.scw
PDB file :
Tito_Scwrl_4DGC.pdb
: