Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKENSIKL
4K1F Chain:D ((8-193))
--INSPAPSFEEVALMPNGSF-KKISLSSYKGK-WVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHGEVCPANWKKGDPGMKPEPNASVEGYFSK----
General information:
TITO was launched using:
RESULT:
Template:
4K1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104304 for 1397 contacts (-74.7/contact) +
2D Compatibility (PS) -19590 + (NN) -1398 + (LL) 664
1D Compatibility (HY) -18800 + (ID) 4200
Total energy: -147628.0 ( -105.68 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_4K1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K1F-query.scw
PDB file :
Tito_Scwrl_4K1F.pdb
: