Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRKKGIILVLSVILIFSIGLLVNNLMTNNKDTAKPKKKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVLAEKGMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQEFWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAALRANNLA--YVGAGKNEDEAYQLKVADIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGYDLNLVEEKIKEERAKNKD---IDYMVVYFHWGVEKTNTPVDYQTQYVKKLV--DDNLVDAIVASHPHWLQGFEVYKDVPIAYSLGNFLFPDYVSGHSA--------ETGIYKLNFDQGKVTAHFDPGIISGNQINMLEGSSKTAQLNYLQSISPNATINSNGDISAK |
| 1USH Chain:? ((26-362)) | ---YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGG---SVLLLS-GGDINTG----------------------------------VPESDLQD-----------AEPDFRGMNLVGYDAMAIG-NHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLT-----TDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKRVLYTPEIAENQQMISLLSPFQNKGKAQLEV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1USH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40219 for 2710 contacts (-14.8/contact) +
2D Compatibility (PS) -32978 + (NN) -5211 + (LL) 3600
1D Compatibility (HY) 4400 + (ID) 2000
Total energy: -72408.0 ( -26.72 by residue)
QMean score : 0.287
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