Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMEQALNITSEIGKLQTVLVKRPGSELENITPEYLESLLFDDIPYLKMMQKEHDFFAKTMRDSNIEVLYLEKLAAEALREANN--KESFLTKMIKESNQM--DESALYVRDYLMSFD-EEEMIRKLMSGLKKSEIPERKKKHLNEMMDEQYPFFLDPLPNLYFTRDPAAVIGNGVTINRMFQPARRRESIFIELILKHHPRFSNQDIPVWSGRGEPFSLEGGDELVLNEETVLVGVSERTDARAVERLAESLF-NRSPKIKRVLAVEIPETRSFMHLDTVFTMVNFAQFTIHPAIQNQQGELNIYIL-------EKSENGLEITPRRDFQRVIAEVLDEPEIDFIPCGGEDV--IVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSRGRGGPRCMTMPLVRENLK |
1S9R Chain:B ((9-409)) | ----KGIHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLG----------IEADHELIVDPMPNLYFTRDPFASVGNGVTIHYMRYKVRQRETLFSRFVFSNHPKLINT--PWYYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKDKFLYSP-IANDVFKFWDYDLVNGGAEPQPVENGLPL------EGLLQSIINKKPV-LIPIAGEGASQMEIERETHFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSMPLSRKDVK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1S9R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -166448 for 3444 contacts (-48.3/contact) +
2D Compatibility (PS) -41974 + (NN) -25730 + (LL) 1796
1D Compatibility (HY) -36800 + (ID) 7250
Total energy: -276406.0 ( -80.26 by residue)
QMean score : 0.537
|
|
|