Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK--
2BM5 Chain:A ((4-186))
-------------------------------MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
General information:
TITO was launched using:
RESULT:
Template:
2BM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -209094 for 1557 contacts (-134.3/contact) +
2D Compatibility (PS) -18908 + (NN) 3118 + (LL) 1460
1D Compatibility (HY) -4000 + (ID) 1550
Total energy: -228974.0 ( -147.06 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_2BM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BM5-query.scw
PDB file :
Tito_Scwrl_2BM5.pdb
: