Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKNLYNYQEFIRLSHEGKIAYEQIDVPKNASLLTEKIDIDNHIYLVVDGYIALILNDGSQNSKIYSIQGKGTFLNYFTLLDQSNNH-FNFKTLSGCSLYKYSKADMEYFLSMFPE-NFGFQFFIMKNQTTHVYFKSLMASSPASEKLKTTFSNMALLHGVLSDDGTVILPQAIKTSHLLSYSNLSKSCFYKDLQYLKTTNQIEKKEKCWIIHDQALYTMIQNGQTSF
1O3T Chain:A ((2-200))
-----PTLEWFLSHCHIHKY-------PSKSTLIHQGEKAET-LYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIK--ITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYG--------------
General information:
TITO was launched using:
RESULT:
Template:
1O3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94070 for 1395 contacts (-67.4/contact) +
2D Compatibility (PS) -20097 + (NN) 1680 + (LL) 2456
1D Compatibility (HY) -10800 + (ID) 1450
Total energy: -122281.0 ( -87.66 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1O3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O3T-query.scw
PDB file :
Tito_Scwrl_1O3T.pdb
: