Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRIGQGYDVHKLAYDRDLIIGGVKIPYEKGLLGHSDADVLLHAITDAIIGAIGAGDIGHFFPDTDMVFKDADSAELLAEIWQKVEADGFRLGNLDATIIAEKPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK
2AMT Chain:D ((1-156))
-MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK
General information:
TITO was launched using:
RESULT:
Template:
2AMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106068 for 1346 contacts (-78.8/contact) +
2D Compatibility (PS) -17358 + (NN) -10275 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 4850
Total energy: -152343.0 ( -113.18 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2AMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AMT-query.scw
PDB file :
Tito_Scwrl_2AMT.pdb
: