Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIMLVCNAGMSTGMLAKKIEAASGNT---LNVTAYSESEYTDYLDGVDLVLIGPQIRFLMPQIKQAVS-VPVHAISPVKYGIMDGKGVYEDIQKLIGG---
1IIB Chain:A ((3-105))
KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAA
General information:
TITO was launched using:
RESULT:
Template:
1IIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88700 for 736 contacts (-120.5/contact) +
2D Compatibility (PS) -9998 + (NN) -145 + (LL) 0
1D Compatibility (HY) -7600 + (ID) 1600
Total energy: -108043.0 ( -146.80 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_1IIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IIB-query.scw
PDB file :
Tito_Scwrl_1IIB.pdb
: