Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYVITTELPSA-EEFVQLRVDAGLSFR----A------IEASRKALLKSVYFVGLRSKENGKLIGMGRLVGDGI-MFIVSDIAVFPSFQGKGFGKVIMTHIKDYIEANLDKTACVTLLA-DVPAHGLYKQFGFRESAPASIGMIYQVGN
3D8P Chain:A ((3-144))
-AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGD---------
General information:
TITO was launched using:
RESULT:
Template:
3D8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75127 for 864 contacts (-87.0/contact) +
2D Compatibility (PS) -13406 + (NN) -3976 + (LL) 804
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -98705.0 ( -114.24 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_3D8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8P-query.scw
PDB file :
Tito_Scwrl_3D8P.pdb
: