Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDFHIRKATNSDAEAIQHVAITSWHHTYQDLIPGDVQDDFLERFYNVETLHNRISATPFAVVEQ-ADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTELLEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNHHAFEEE
2KCW Chain:A ((1-143))
MVISIRRSRHEEGEELVAIWCRSVDATHD-FLSAEYRTEL------EDLVRSFLPEAPLWVAVNERDQPVGFMLLSG-----QHMDALFIDPDVRGCGVGRVLVEHALSMAP---ELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLA---------
General information:
TITO was launched using:
RESULT:
Template:
2KCW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100680 for 1061 contacts (-94.9/contact) +
2D Compatibility (PS) -15061 + (NN) -3033 + (LL) 1684
1D Compatibility (HY) -9200 + (ID) 1550
Total energy: -127840.0 ( -120.49 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_2KCW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KCW-query.scw
PDB file :
Tito_Scwrl_2KCW.pdb
: