Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNALGMIETKGLVGAIEAADAMVKAANVSLVGYEKIGSGLVTVMVRGDVGAVKAATDAGAAAARNVGEVQSIHVIPRPHNDVETLLQKGL
4PPD Chain:G ((10-95))
--EALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILP---
General information:
TITO was launched using:
RESULT:
Template:
4PPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43169 for 665 contacts (-64.9/contact) +
2D Compatibility (PS) -9558 + (NN) -4011 + (LL) 196
1D Compatibility (HY) -10400 + (ID) 3550
Total energy: -70492.0 ( -106.00 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_4PPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PPD-query.scw
PDB file :
Tito_Scwrl_4PPD.pdb
: