Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIK-D--KEVVKTGMR-REIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPDLEVKVIPGITASIGAAAVLGAPIMH-----DFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEH-KSGDTVVGIVKDVGRKEERKIITTMQGIDY--ELVDMTTVVIVGNKETYVKNGKMITPRGYSL
1PJQ Chain:A ((217-453))
EVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHA--GIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVT------G-E---LDWENLAAEKQTLVFYMGLN-----QAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDKLNW--------
General information:
TITO was launched using:
RESULT:
Template:
1PJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160531 for 1753 contacts (-91.6/contact) +
2D Compatibility (PS) -24048 + (NN) -8182 + (LL) 1284
1D Compatibility (HY) -8000 + (ID) 2650
Total energy: -202127.0 ( -115.30 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_1PJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PJQ-query.scw
PDB file :
Tito_Scwrl_1PJQ.pdb
: