Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VAVEKITMPKLGESVTEGTISSWLVKPGDTVEKYDAIAEVLTDKVTAEIPSSFSGTIKEILAEEDETLEVGEVICTIETEEASSSEPVVEAEQTEPKTPEKQETKQVKLAEAPASGRFSPAVLRIAGENNIDLSTVEGTGKGGRITRKDLLQVIENGPVAPKREEVKSAPQEKEATPNPVRSAAGDREIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNTVKD-SFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTW--AGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDM-IAVRDMVNLCLSIDHRILDGLLAGKFLQAIKAKVEKISKENTALY |
2II3 Chain:D ((31-252)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRTEPVKGFHKAMVKTMSAA-LKIPHFGYCDEVDLTELVKLREELKPIAFAR--GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLE---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2II3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138755 for 1660 contacts (-83.6/contact) +
2D Compatibility (PS) -24238 + (NN) -12016 + (LL) 12788
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -180121.0 ( -108.51 by residue)
QMean score : 0.437
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