Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MNNIMLVCSAGMSTSLLVKKMTEAIEKQQVDATVIAVAEADFDKY-KGNVDVVLLAPQVRFLEKN-LKRVLDPLGIPVAIIN-GIDYGTMDGEKVLNDALAMIEK
3NBM Chain:A ((5-108))
KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMG-VYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ-
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79108 for 761 contacts (-104.0/contact) +
2D Compatibility (PS) -10752 + (NN) -4098 + (LL) -108
1D Compatibility (HY) 0 + (ID) 900
Total energy: -94966.0 ( -124.79 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: