Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MKKLIIAALGLTLVL------------SGCAPKLDSNDKVVQKD-----DSKAETGIMTKNQISSNYYKTV------LPYKASKSR--GLVVSNIYSRYDINELESGLMRVSQNKY-----------SPDNYLFQEGQY--LDKETLEKWLDRKSDKNPNGLN-PASNGNGENRKPIYLAHILEQDYLKQTDKDTVALGGISIALAMNSVDYYQKEKYGDTYEQPISDSELLA-QGKEMSATVLNRIRQ-TKGLENV-------PVTIAIYKQGARDAVAPGN-------YIAYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNFLNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIG-----FTQYVTD-------------------------------------------------LVGQHIPKTA---DLQVNISTSDGPA-----ALITR--KANEDAATAHIYD--------------------------- |
| 4R1D Chain:A ((45-561)) | QTAPLPVIFIPGIMGTNLRNKADKSEVWRPPNGLWPMDDLFASIGALWTWAWRGPKARQELLKAEQVEVDDQGTIDVGQSGLSEEAARLRGWGKVMRSAYNPV-MGLMERRLDNIVSRRELQAWWNDEALSPPGDQGEEQGKVGPIDEEELLRASRYQFDVWCAGYNWLQSNRQSALDVRDYIENTVLPFYQKECGLDPEQMRRMKVILVTHSMGGLVARALTQLHGYERVLGVVHGVQPATGSSTIYHHMRCGYEGIAQVVLGRNAGEVTAIVANSAGALELAPSAEYREGRPWLFLCDAQGQVL---KDIDGKPRAYPQNQDPYEEIYKNTTWYGLVPEQNSQYLDMSDKKEGLRVGPRDNFEDLIDSIANFHGELSAAGYHSETYAHYGADDSRHSWRDLIWKGDPTPLETPGATLNDDENGTYNSWFRRGLPTIVQGPLETGNPLDASGSGGDETVPTDSGQAPALAGVKASFRHGSKGKGQANTKRGYEHQESYNDARAQWAALYGVIKITQLADW |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 54197 for 2765 contacts (19.6/contact) +
2D Compatibility (PS) -38099 + (NN) -4725 + (LL) -28
1D Compatibility (HY) -6400 + (ID) 3700
Total energy: 1245.0 ( 0.45 by residue)
QMean score : 0.111
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