Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPFFDGDMVLDLFAGSGGLGIEALSRGAERAVFID-QAALAIKTIRQNLEGCHFTERAEVYRNDA-ERALKLLHKNEWKFDLIFLDPPYKKQQLEKLIGTLEKLELVNENGRIICEHDKEAIMPDTIGKFEKIKSVSYGITVLSIFEFQEA
2FPO Chain:D ((12-194))
GQIRIIGGQWRGRKLP----VPDSPGTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT--LKAGNARVVNSNAMSFLAQ----KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQ
General information:
TITO was launched using:
RESULT:
Template:
2FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70712 for 1420 contacts (-49.8/contact) +
2D Compatibility (PS) -18595 + (NN) -4274 + (LL) 368
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: -105263.0 ( -74.13 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_2FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FPO-query.scw
PDB file :
Tito_Scwrl_2FPO.pdb
: