Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVRDVNFSYNGTDA-ILKNVSFTIQKNKINTIVGPNGSGKSTLLEILARLLSPNSGDVLLEGKSIFEWKAKEFAQNVAIVHQSNVLPNELMVKELLYFGRLPYKNWRMTRTKEDDLAVERALM-----------QTELTEKAEKFVDSLSGGERQRVFIATALVQDTPILLLDEPTTFLDMYFQLEILELVKRLNQEENLTIVMILHDLNQALMYSDHLIVMKNGEVVAKGEPEELLTTDLIAETYGVVADVLNDANNGKYIVPQRRKEF
2ONJ Chain:A ((340-564))
IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR---------PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR--TTLIVAHRLS-TITHADKIVVIENGHIVETGTHRELIA--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2ONJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114043 for 1637 contacts (-69.7/contact) +
2D Compatibility (PS) -23234 + (NN) -9611 + (LL) 3028
1D Compatibility (HY) -17600 + (ID) 3750
Total energy: -165210.0 ( -100.92 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_2ONJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ONJ-query.scw
PDB file :
Tito_Scwrl_2ONJ.pdb
: