Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETT--WLHEAAAGTIEPEKLMYPLDKVVNDTKTTFIQD-TVVKINKDEKTVTLDANGDISYDYLLIALGSEAETFGISGLK-EYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGGAGFTGIEFLGELTNRIPELVKQYDVPREKVRIYCMEAAPKVLPQF-DAKLVDYGVGVLEDRGVEFHVGKPVKEATADG-----VKYAESENEVREIKAATIIWAAGVRGNSVIE-ASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPA-NDR-PFPPTAQIAMQQADVAAVNLAKLVKGETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK |
3LXD Chain:A ((8-321)) | -ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDA-----------GAKNAVVIGGGYIGLEAAAVLTKF-------------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQD--G-SVIPADIVIVGIGIVPCVGALISAGAS-GGNGVDVDEFCRT-SLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGA----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LXD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194784 for 2518 contacts (-77.4/contact) +
2D Compatibility (PS) -32060 + (NN) -7354 + (LL) 5756
1D Compatibility (HY) -8000 + (ID) 3100
Total energy: -239542.0 ( -95.13 by residue)
QMean score : 0.588
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