Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LDEKTKIYDITIIGGGPVGLFAAFYAGMRNAS-VKIIESLPQLGGQLSTLYPEKYIYDIPGYPS-VRAQELVNNLIQQMKPFDPTVALEEAVQSVEKQVDGTFEIITK-KDTHYSKAIIITAGNGAFEPRRLDLPEAEQYEGTNIHYFINDLS-RFSGRRVAVCGGGDSAVDWALMLEKVASSVAIVHRRNAFRAHEHSVNN-LEKSSIAIKTPFIPTEVLGNGDKLTHITLQEVKGDTTETLEIDDFIINYGFVSSLGPIKN----WGLELER-NSIVVNSKMETSIPGIYCAGDICTYDGKVKLIATGFGEAPTAVNNAMNFIDPKTRVQPMHSTSLFE |
3R9U Chain:A ((1-314)) | ---SNAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGM-PGGQITSSS---EIENYPGVAQVMDGISFMAPWSEQCMRFGLKH-EMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGS---APKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKL-KDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDA--PKQVICAAGDGAVAALSAMAYIESL------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3R9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -239490 for 2623 contacts (-91.3/contact) +
2D Compatibility (PS) -32782 + (NN) -11279 + (LL) 1668
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -302633.0 ( -115.38 by residue)
QMean score : 0.514
|
|
|