Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MLDHYLTIHSDGKHEIIIEKSRFICHIKRATTETEAQTFIQEIKKEHRDATHNCSAYIIGENDQYQKAHDDGEPSGTAGFPMLEILKKKSLKNVAVVVTRYFGGTKLGAGGLVRAYGSAVSEAIQAIGIVECKLATIVECSFAYPLLGKVENALELKAYQIDKKEFTEKVVLHIFVDNDELQDFFNWITEISNGQLEYKEGPQKYREKDVT-
1GUX Chain:A ((9-206))
NTIQQLMMILNSASDQP---SENLISYFNNCT-----VNPKESILKRVKDIGYIFKEKFAKAVG------QGCVEIGSQRYKLGVRLYYRVMESMLK--------------------SENFSKLLNDNIFHMSLLACALEVVMATYSFPWILNVLNLKAFDFYKV--IESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSK
General information:
TITO was launched using:
RESULT:
Template:
1GUX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31121 for 1314 contacts (-23.7/contact) +
2D Compatibility (PS) -18154 + (NN) -5844 + (LL) 2828
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -58191.0 ( -44.29 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1GUX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GUX-query.scw
PDB file :
Tito_Scwrl_1GUX.pdb
: